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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN37806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 31810.9 Da PI: 7.5522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l+++v+ +G g+W+ +++ g++R +k+c++rw++yl KHN37806.1 16 RGAWSAEEDQILINYVQAHGEGNWRELSKRAGLKRRGKSCRLRWLNYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++ +lG++ W++Ia +++ gRt++++k++w++yl KHN37806.1 69 RGNISSDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 114 78999*****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.151 | 11 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 15 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.12E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.421 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.81E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MKRKAMSCDN RDAVNRGAWS AEEDQILINY VQAHGEGNWR ELSKRAGLKR RGKSCRLRWL 60 NYLKPDIKRG NISSDEEDLI IRLHSLLGNR WSLIAGRLPG RTDNEIKNYW NTYLRKKTEH 120 KDKHNKILSH NNNIPIKLRI ESPQCSKNSS GNVLDPAKSP HPMRCTKVMM PVNDSVNTMN 180 LIATSWENHN PSASMPLDDH NHCLTGVLQD LDISDLLMSY EDDCRFNGYA CVEIPQHIFK 240 DETWRLDDSM GEEAWYENWK IDTYFPQDMG FSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 53 | LKRRGKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535515.1 | 0.0 | PREDICTED: transcription factor TT2-like | ||||
Swissprot | Q9FJA2 | 2e-54 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A0B2RTS8 | 0.0 | A0A0B2RTS8_GLYSO; Transcription factor TT2 | ||||
STRING | GLYMA10G35061.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15511 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-55 | MYB family protein |
Publications ? help Back to Top | |||
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